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1

Deep-Learning based Multiclass Retinal Fluid Segmentation and Detection in Optical Coherence Tomography Images using a Fully Convolutional Neural Network

Lu, Donghuan, Heisler, Morgan, Lee, Sieun, Ding, Gavin Weiguang, Navajas, Eduardo, Sarunic, Marinko V., Beg, Mirza Faisal

Journal:

Medical Image Analysis

Year:

2019

Language:

english

File:

PDF, 19.27 MB

english, 2019

2

Handheld forward-imaging needle endoscope for ophthalmic optical coherence tomography inspection

Han, Shuo, Sarunic, Marinko V., Wu, Jigang, Humayun, Mark, Yang, Changhuei

Journal:

Journal of Biomedical Optics

Year:

2008

Language:

english

File:

PDF, 295 KB

english, 2008

3

Sensitivity advantage of swept source and Fourier domain optical coherence tomography

Choma, Michael, Sarunic, Marinko, Yang, Changhuei, Izatt, Joseph

Journal:

Year:

2003

Language:

english

File:

PDF, 344 KB

english, 2003

4

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 7 February 2015)] Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIX - Progress on developing wavefront sensorless adaptive optics optical coherence tomography for in vivo retinal imaging in mice

Fujimoto, James G., Izatt, Joseph A., Tuchin, Valery V., Zam, Azhar, Zhang, Pengfei, Jian, Yifan, Sarunic, Marinko V., Bonora, Stefano, Pugh, Edward N., Zawadzki, Robert J.

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

5

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 1 February 2014)] Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVIII - AO-OCT for in vivo mouse retinal imaging: Application of adaptive lens in wavefornt sensorless aberration correction

Izatt, Joseph A., Fujimoto, James G., Tuchin, Valery V., Bonora, Stefano, Jian, Yifan, Pugh, Edward N., Sarunic, Marinko V., Zawadzki, Robert J.

Year:

2014

Language:

english

File:

PDF, 583 KB

english, 2014

6

Segmentation of the foveal microvasculature using deep learning networks

Prentašic, Pavle, Heisler, Morgan, Mammo, Zaid, Lee, Sieun, Merkur, Andrew, Navajas, Eduardo, Beg, Mirza Faisal, Šarunic, Marinko, Loncaric, Sven

Journal:

Journal of Biomedical Optics

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

7

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 28 January 2017)] Adaptive Optics and Wavefront Control for Biological Systems III - Real time optimization algorithm for wavefront sensorless adaptive optics OCT (Conference Presentation)

Bifano, Thomas G., Kubby, Joel, Gigan, Sylvain, Verstraete, Hans R. G. W., Heisler, Morgan, Ju, Myeong Jin, Wahl, Daniel J., Bliek, Laurens, Kalkman, Jeroen, Bonora, Stefano, Sarunic, Marinko V., Verh

Year:

2017

Language:

english

File:

PDF, 115 KB

english, 2017

8

Wavefront sensorless adaptive optics OCT with the DONE algorithm for in vivo human retinal imaging [Invited]

Verstraete, Hans R. G. W., Heisler, Morgan, Ju, Myeong Jin, Wahl, Daniel, Bliek, Laurens, Kalkman, Jeroen, Bonora, Stefano, Jian, Yifan, Verhaegen, Michel, Sarunic, Marinko V.

Journal:

Biomedical Optics Express

Year:

2017

Language:

english

File:

PDF, 11.99 MB

english, 2017

9

Multi-scale and -contrast sensorless adaptive optics optical coherence tomography

Ju, Myeong Jin, Hsu, Destiny, Kwon, Ji Hoon, Wahl, Daniel J., Bonora, Stefano, Jian, Yifan, Makita, Shuichi, Yasuno, Yoshiaki, Sarunic, Marinko V.

Journal:

Quantitative Imaging in Medicine and Surgery

Year:

2019

Language:

english

File:

PDF, 11.70 MB

english, 2019

10

[IEEE 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) - Dubrovnik, Croatia (2019.9.23-2019.9.25)] 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA) - Transfer Learning with U-Net type model for Automatic Segmentation of Three Retinal Layers In Optical Coherence Tomography Images

Matovinovic, Ivana Zadro, Loncaric, Sven, Lo, Julian, Heisler, Morgan, Sarunic, Marinko

Year:

2019

Language:

english

File:

PDF, 781 KB

english, 2019

11

Pseudoârealâtime retinal layer segmentation for highâresolution adaptive optics optical coherence tomography

Janpongsri, Worawee, Huang, Joey, Ng, Ringo, Wahl, Daniel J., Sarunic, Marinko V., Jian, Yifan

Journal:

Journal of Biophotonics

Year:

2020

File:

PDF, 2.13 MB

2020

12

Ensemble Deep Learning for Diabetic Retinopathy Detection Using Optical Coherence Tomography Angiography

Heisler, Morgan, Karst, Sonja, Lo, Julian, Mammo, Zaid, Yu, Timothy, Warner, Simon, Maberley, David, Beg, Mirza Faisal, Navajas, Eduardo V., Sarunic, Marinko V.

Journal:

Translational Vision Science & Technology

Year:

2020

File:

PDF, 3.94 MB

2020

13

Spectral domain fluorescence coherence phase microscopy

St. Quintin, Andra, Merhi, Lukas-Karim, Sarunic, Marinko V.

Journal:

Year:

2011

Language:

english

File:

PDF, 705 KB

english, 2011

14

Performance and scalability of Fourier domain optical coherence tomography acceleration using graphics processing units

Li, Jian, Bloch, Pavel, Xu, Jing, Sarunic, Marinko V., Shannon, Lesley

Journal:

Year:

2011

Language:

english

File:

PDF, 608 KB

english, 2011

15

Real-time high-speed volumetric imaging using compressive sampling optical coherence tomography

Young, Mei, Lebed, Evgeniy, Jian, Yifan, Mackenzie, Paul J., Beg, Mirza Faisal, Sarunic, Marinko V.

Journal:

Biomedical Optics Express

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

16

Frequency estimation precision in Doppler optical coherence tomography using the Cramer-Rao lower bound

Yazdanfar, Siavash, Yang, Changhuei, Sarunic, Marinko V., Izatt, Joseph A.

Journal:

Year:

2005

Language:

english

File:

PDF, 237 KB

english, 2005

17

Instantaneous complex conjugate resolved spectral domain and swept-source OCT using 3x3 fiber couplers

Sarunic, Marinko V., Choma, Michael A., Yang, Changhuei, Izatt, Joseph A.

Journal:

Year:

2005

Language:

english

File:

PDF, 1.55 MB

english, 2005

18

SNR enhancement through phase dependent signal reconstruction algorithms for phase separated interferometric signals

McDowell, Emily J., Sarunic, Marinko V., Yaqoob, Zahid, Yang, Changhuei

Journal:

Year:

2007

Language:

english

File:

PDF, 962 KB

english, 2007

19

Rapid Volumetric OCT Image Acquisition Using Compressive Sampling

Lebed, Evgeniy, Mackenzie, Paul J., Sarunic, Marinko V., Beg, Faisal M.

Journal:

Year:

2010

Language:

english

File:

PDF, 5.25 MB

english, 2010

20

Longitudinal study of retinal degeneration in a rat using spectral domain optical coherence tomography

Sarunic, Marinko V., Yazdanpanah, Azadeh, Gibson, Eli, Xu, Jing, Bai, Yujing, Lee, Sieun, Saragovi, H. Uri, Beg, Mirza Faisal

Journal:

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

21

Spectral domain second-harmonic optical coherence tomography

Sarunic, Marinko V., Applegate, Brian E., Izatt, Joseph A.

Journal:

Year:

2005

Language:

english

File:

PDF, 333 KB

english, 2005

22

Full-field swept-source phase microscopy

Sarunic, Marinko V., Weinberg, Seth, Izatt, Joseph A.

Journal:

Year:

2006

Language:

english

File:

PDF, 708 KB

english, 2006

23

Real-time quadrature projection complex conjugate resolved Fourier domain optical coherence tomography

Sarunic, Marinko V., Applegate, Brian E., Izatt, Joseph A.

Journal:

Year:

2006

Language:

english

File:

PDF, 288 KB

english, 2006

24

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, USA (Saturday 2 February 2013)] Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XVII - GPU accelerated OCT processing at megahertz axial scan rate and high resolution video rate volumetric rendering

Jian, Yifan, Fujimoto, James G., Izatt, Joseph A., Wong, Kevin, Sarunic, Marinko V., Tuchin, Valery V.

Year:

2013

Language:

english

File:

PDF, 999 KB

english, 2013

25

[IEEE 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM) - Salt Lake City, UT, USA (2011.05.1-2011.05.3)] 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom Computing Machines - Scalable, High Performance Fourier Domain Optical Coherence Tomography: Why FPGAs and Not GPGPUs

Li, Jian, Sarunic, Marinko V., Shannon, Lesley

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

26

[IEEE 2009 IEEE 13th International Multitopic Conference (INMIC) - Islamabad, Pakistan (2009.12.14-2009.12.15)] 2009 IEEE 13th International Multitopic Conference - A 2-DOF embeddable angular displacement sensor based on optical fiber bending loss

Berring, John, Menon, Carlo, Sarunic, Marinko V., Sarai, Simran

Year:

2009

Language:

english

File:

PDF, 298 KB

english, 2009

27

Automatic Cycle Averaging for Denoising Approximately Periodic Spatiotemporal Signals

Ding, Weiguang, Lin, Eric, Ribeiro, Amanda, Sarunic, Marinko V., Tibbits, Glen F., Beg, Mirza Faisal

Journal:

IEEE Transactions on Medical Imaging

Year:

2014

Language:

english

File:

PDF, 2.64 MB

english, 2014

28

[IEEE 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Osaka (2013.7.3-2013.7.7)] 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping

Weiguang Ding,, Lin, Eric, Ribeiro, Amanda, Sarunic, Marinko V., Tibbits, Glen F., Beg, Mirza Faisal

Year:

2013

Language:

english

File:

PDF, 562 KB

english, 2013

29

Quantitative Evaluation of Transform Domains for Compressive Sampling-Based Recovery of Sparsely Sampled Volumetric OCT Images

Wu, Andy Bo, Lebed, Evgeniy, Sarunic, Marinko V., Beg, Mirza Faisal

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

30

[IEEE 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Osaka (2013.7.3-2013.7.7)] 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images

Weiguang Ding,, Mei Young,, Bourgault, Serge, Sieun Lee,, Albiani, David A., Kirker, Andrew W., Forooghian, Farzin, Sarunic, Marinko V., Merkur, Andrew B., Beg, Mirza Faisal

Year:

2013

Language:

english

File:

PDF, 1.79 MB

english, 2013

31

Exact Surface Registration of Retinal Surfaces From 3-D Optical Coherence Tomography Images

Lee, Sieun, Lebed, Evgeniy, Sarunic, Marinko V., Beg, Mirza Faisal

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2015

Language:

english

File:

PDF, 4.42 MB

english, 2015

32

In Vivo Imaging of the Mouse Model of X-Linked Juvenile Retinoschisis with Fourier Domain Optical Coherence Tomography

Xu, Jing, Molday, Laurie L., Molday, Robert S., Sarunic, Marinko V.

Journal:

Investigative Ophthalmology & Visual Science

Year:

2009

Language:

english

File:

PDF, 494 KB

english, 2009

33

Comparative Analysis of Repeatability of Manual and Automated Choroidal Thickness Measurements in Nonneovascular Age-Related Macular Degeneration

Lee, Sieun, Fallah, Nader, Forooghian, Farzin, Ko, Ashley, Pakzad-Vaezi, Kaivon, Merkur, Andrew B., Kirker, Andrew W., Albiani, David A., Young, Mei, Sarunic, Marinko V., Beg, Mirza Faisal

Journal:

Investigative Ophthalmology & Visual Science

Year:

2013

Language:

english

File:

PDF, 641 KB

english, 2013

34

Optic Nerve Head and Peripapillary Morphometrics in Myopic Glaucoma

Lee, Sieun, Han, Sherry X., Young, Mei, Beg, Mirza Faisal, Sarunic, Marinko V., Mackenzie, Paul J.

Journal:

Investigative Opthalmology & Visual Science

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

35

Comparison of the Clinical Disc Margin Seen in Stereo Disc Photographs With Neural Canal Opening Seen in Optical Coherence Tomography Images

Young, Mei, Lee, Sieun, Rateb, Mahmoud, Beg, Mirza F., Sarunic, Marinko V., Mackenzie, Paul J.

Journal:

Journal of Glaucoma

Year:

2014

Language:

english

File:

PDF, 606 KB

english, 2014

36

Rapid radial optical coherence tomography image acquisition

Lebed, Evgeniy, Lee, Sieun, Sarunic, Marinko V., Beg, Mirza Faisal

Journal:

Journal of Biomedical Optics

Year:

2013

Language:

english

File:

PDF, 20.72 MB

english, 2013

37

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 7 February 2015)] Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XIX - Enhancing the visualization of human retina vascular networks by Graphics Processing Unit accelerated speckle variance OCT and graph cut retinal layer segmentation

Fujimoto, James G., Izatt, Joseph A., Tuchin, Valery V., Xu, Jing, Wong, Kevin S. K., Wong, Vincent, Heisler, Morgan, Lee, Sieun, Cua, Michelle, Jian, Yifan, Sarunic, Marinko V.

Year:

2015

Language:

english

File:

PDF, 574 KB

english, 2015

38

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 7 February 2015)] Adaptive Optics and Wavefront Control for Biological Systems - Comparison of a novel adaptive lens with deformable mirrors and its application in high-resolution in-vivo OCT imaging

Bifano, Thomas G., Kubby, Joel, Gigan, Sylvain, Rizzotto, Luca, Bonora, Stefano, Jian, Yifan, Zhang, Pengfei, Zam, Azhar, Pugh, Edward N., Mammano, F., Zawadzki, Robert J., Sarunic, Marinko V.

Year:

2015

Language:

english

File:

PDF, 426 KB

english, 2015

39

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 7 February 2015)] Ophthalmic Technologies XXV - Multispectral scanning laser ophthalmoscopy combined with optical coherence tomography for simultaneous in vivo mouse retinal imaging

Manns, Fabrice, Söderberg, Per G., Ho, Arthur, Zhang, Pengfei, Zam, Azhar, Jian, Yifan, Wang, Xinlei, Burns, Marie E., Sarunic, Marinko V., Pugh, Edward N., Zawadzki, Robert J.

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

40

SPIE Proceedings [SPIE SPIE BiOS - San Francisco, California, United States (Saturday 7 February 2015)] Ophthalmic Technologies XXV - Automatic optimization high-speed high-resolution OCT retinal imaging at 1μm

Manns, Fabrice, Söderberg, Per G., Ho, Arthur, Cua, Michelle, Liu, Xiyun, Miao, Dongkai, Lee, Sujin, Lee, Sieun, Bonora, Stefano, Zawadzki, Robert J., Mackenzie, Paul J., Jian, Yifan, Sarunic, Marinko

Year:

2015

Language:

english

File:

PDF, 683 KB

english, 2015

41

Imaging the Ocular Anterior Segment With Real-Time, Full-Range Fourier-Domain Optical Coherence Tomography

Sarunic, Marinko V.

Journal:

Archives of Ophthalmology

Year:

2008

Language:

english

File:

PDF, 487 KB

english, 2008

42

Fourier Domain Optical Coherence Tomography as a Noninvasive Means for In Vivo Detection of Retinal Degeneration in Xenopus laevis Tadpoles

Lee, Damian C., Xu, Jing, Sarunic, Marinko V., Moritz, Orson L.

Journal:

Investigative Ophthalmology & Visual Science

Year:

2010

Language:

english

File:

PDF, 2.86 MB

english, 2010

43

Real-time acquisition and display of flow contrast using speckle variance optical coherence tomography in a graphics processing unit

Xu, Jing, Wong, Kevin, Jian, Yifan, Sarunic, Marinko V.

Journal:

Journal of Biomedical Optics

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

44

Morphological phenotyping of mouse hearts using optical coherence tomography

Cua, Michelle, Lin, Eric, Lee, Ling, Sheng, Xiaoye, Wong, Kevin S. K., Tibbits, Glen F., Beg, Mirza Faisal, Sarunic, Marinko V.

Journal:

Journal of Biomedical Optics

Year:

2014

Language:

english

File:

PDF, 4.63 MB

english, 2014

45

Adaptive optics optical coherence tomography for in vivo mouse retinal imaging

Jian, Yifan, Zawadzki, Robert J., Sarunic, Marinko V.

Journal:

Journal of Biomedical Optics

Year:

2013

Language:

english

File:

PDF, 3.19 MB

english, 2013

46

Construction and use of a zebrafish heart voltage and calcium optical mapping system, with integrated electrocardiogram and programmable electrical stimulation

Lin, Eric, Craig, Calvin, Lamothe, Marcel, Sarunic, Marinko V., Beg, Mirza Faisal, Tibbits, Glen F.

Journal:

AJP Regulatory Integrative and Comparative Physiology

Year:

2015

Language:

english

File:

PDF, 3.75 MB

english, 2015

47

In vivo optical imaging of human retinal capillary networks using speckle variance optical coherence tomography with quantitative clinico-histological correlation

Chan, Geoffrey, Balaratnasingam, Chandrakumar, Xu, Jing, Mammo, Zaid, Han, Sherry, Mackenzie, Paul, Merkur, Andrew, Kirker, Andrew, Albiani, David, Sarunic, Marinko V., Yu, Dao-Yi

Journal:

Microvascular Research

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

48

SPIE Proceedings [SPIE 26th Annual International Symposium on Microlithography - Santa Clara, CA (Sunday 25 February 2001)] Advances in Resist Technology and Processing XVIII - BiIn: a sensitive bimetallic thermal resist

Chapman, Glenn H., Tu, Richard Y., Sarunic, Marinko V., Dhaliwal, Jagjot, Houlihan, Francis M.

Year:

2001

Language:

english

File:

PDF, 639 KB

english, 2001

49

SPIE Proceedings [SPIE Biomedical Optics 2005 - San Jose, CA (Saturday 22 January 2005)] Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine IX - Molecular contrast optical coherence tomography: SNR comparison of techniques and introduction of ground state recovery pump-probe OCT

Applegate, Brian E., Sarunic, Marinko V., Yang, Changhuei, Izatt, Joseph A., Tuchin, Valery V., Izatt, Joseph A., Fujimoto, James G.

Year:

2005

Language:

english

File:

PDF, 580 KB

english, 2005

50

Wavefront correction and high-resolution in vivo OCT imaging with an objective integrated multi-actuator adaptive lens

Bonora, Stefano, Jian, Yifan, Zhang, Pengfei, Zam, Azhar, Pugh, Edward N., Zawadzki, Robert J., Sarunic, Marinko V.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015